James A. Fellows Yates
James A. Fellows Yates
### Description of feature Currently you can get verbose module (and presumably subworkflow) nf-test verbose/debugging logs by asking for `--verbose` at the tools level. I find this unintuitive as if...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...
### Description of feature Seems to be tripping people up is that they don't have GTDB results for some of their bins https://nfcore.slack.com/archives/CE6SDBX2A/p1708189315383339?thread_ts=1707403870.961809&cid=CE6SDBX2A https://nfcore.slack.com/archives/CE9MS66BS/p1710942695546379?thread_ts=1710942636.651329&cid=CE9MS66BS
### Description of feature A major problem we currently have during development is our CI tests are nowhere near comprehensive enough due to the pipeline utilising extremely large database files...
### Description of the bug Fails due to the if/else statement around input to SPLIT_FASTA in binning.nf only consideres maxbin2 and/or metabat or both (CONCOCT does not produce 'unbins'). Should...
### Description of feature As originally suggested by @maxibor in #checkm. As it's now published: https://www.nature.com/articles/s41592-023-01940-w I'm not sure on the state of Bioconda or container compatibility but can be...
### Description of feature We should review the `WorkflowMag.groovy` file and remove checks that are now covered by the `nextflow_schema.json` file.
### Description of feature As described by @maxibor here: https://github.com/nf-core/mag/pull/489#issuecomment-1791336502 Where originally we were getting file name clashes of bins sent to (microbes) and skipped (eukaryotes) around DASTool. This was...
### Description of feature As originally suggested by @ramprasadn here: https://github.com/nf-core/mag/pull/499#discussion_r1318384733
### Description of feature As per the latest template