James A. Fellows Yates
James A. Fellows Yates
### Sanity checks - [X] I have searched [github.com/withfig/fig/issues](https://github.com/withfig/fig/issues?q=) and there are no duplicates of my issue - [X] I have run `fig doctor` in the affected terminal session -...
### Is your feature request related to a problem? Please describe bwa aln > bwa sampe/samse > samtools sort > samtools index ### Describe the solution you'd like _No response_...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
### Description of feature Currently `tools` cleverly detects changes to module code within a pipeline, and generates a `diff` file for you. However in some cases you may wish to...
Notes from meeting: - Can we reverse map test data :point_right: modules? - If so, we can test all affected modules when updating test data - Don't need to keep...
This repository is getting very large and having to shallow clone/single-branch clone can be tricky, so we could move the `modules` test data branch to a separate repository.
### Description of feature Also recommended by Prokka developer! nf-core module already exists
### Description of feature https://github.com/BinPro/CONCOCT At the request of @alexhbnr
Start adding FASTP/ADAPTERREMOVAL subworkflwos ## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code...