jfbazan

And I forgot to mention that Deepmind's AF Colab seems to run well (albeit sooo slowly, as usual) and isn't affected by the other ColabFold import problems

Thanks Milot! And also, is an update to AF2.1.2 imminent? Cheers, FB Sent from my iPhone > On Feb 2, 2022, at 1:38 PM, Milot Mirdita ***@***.***> wrote: > >...

I've had pretty much the same issue, on both the multimer-capable ColabFold as well as the older Advanced (AF2.0) version, when trying to use MMSeq2. On the former Colab, there's...

No worries at all, Martin! Thx to you and Sergey for all your brilliant efforts with the ColabFold initiative, and all the best on the holidays, Cheers, Fernando Sent from...

The patch seems to work––multimer_v3 option runs just fine! However, one problem remains: the final **PAE plots** for the top 5 models do not show, and one only gets the...

Indeed, DeepFold_v1 doesn't divulge PAE (yet;), while AF2's multimer_3 still does...but reveals them only in a .png file that's part of the zipped download. In short, it fails to show...

After reloading the new ColabFold, have not experienced the missing PAE plot on my end, chalk it up to weird browser behavior. Thx for your patience, again...& HNY!

The beta colab running AF2.3 has been working beautifully for multimers, until tonight it suddenly and frustratingly has been crashing right at the last stage, the model reranking by multimer,...

Indeed, back to life! Many thanks, Sergey

I think I ran into the same issue with the (very useful!) relax_amber.ipynb colab notebook. Thanks in advance for putting it back in circulation! Here's the error message: tnd.pdb(n/a) -...