jfbazan
jfbazan
Quick update: This error does not appear to happen when ColabFold1.5.2 is run in monomer mode (AF2 mode set to 'auto' = ptm for monomer), but only happens on multimer...
Oddly enough, I also get a 'Nan' error when running DeepMind's AF Colab that is running AF2.3.1 in multimer mode. This time it crashed as it was running the AMBER...
Thx for the heads-up on the jax version clash! Running the ColabFold again in a quick test (after reboot of the Colab), it looks like another jax issue pops up...
Tried again this morning (Tue 28th), and sadly get a similar jax issue as last night's AF2.3.1. multimer run, immediately after it downloads the AF2 weights. Here's the error msg:...
Just tried again, & without going into AF2 weights download stage, rapidly got the same error msg: KeyError Traceback (most recent call last) [/content/colabfold/batch.py](https://localhost:8080/#) in run(queries, result_dir, num_models, is_complex, num_recycles,...
Latest multimer run was positive, fixes seem to be holding! Many thx, Milot & Sergey
Patch seems to work! Many thanks, Milot!
Hi Milot, this was with the regular ColabFold, not locally installed. And yes, I use the standalone Relax Colab daily, very useful. However, the reasons for this particular crash are...