jfbazan
jfbazan
Below are the error messages that result, centering on import errors in loading the different parts of the Colab. Perhaps there's updating of AF2 to 2.1.1? Thx, FB ImportError Traceback...
While trying to run RF2 this morning, I get two separate error messages as the program crashes. The first fault occurs at the early 'Setup RosettaFold' stage (below), and the...
When I ran an open ColabFold1.5.3 on my browser this morning for a multimer_v3 job, it crashed at the "Run Prediction" stage right after collecting the MSAs and drawing the...
This is fairly new, having run ColabFold 1.5.3 (the workhorse AF2 w/ MMseqs version) quite well last night, but the first job this morning crashed at the "Run Prediction" stage...
A long-running 3-way multimer job had finally reached the end of its prediction run, and was set to do the ranking step (& lightly refine the top model), when the...
I ran into a fairly new issue with running the ESM_advanced Colab with a ~120 aa sequence (that predicts well with the ESMfold Colab) that seems to happen after the...
At the end of a RosettaFold2 Colab dimer prediction run (with default variables) that has run through 6 recycles––where I tried both V100 GPU & then T4 TPU settings (both...
Just this afternoon (Mon Feb 27), my ColabFold AF2.3.1 multimer runs suddenly started exhibiting odd "Nan" (which = Not-a-number) values for the pLDDT, pTM and ipTM metrics, and accordingly, the...