Jennifer Hillman-Jackson

Every filter tool that includes a "genome regions" input could be made more user friendly

7

Example here at GHelp: Filter SAM or BAM tool -- "Select regions" filtering term formatting Maybe have the tools remove extra spaces the users add by accident? Or give some...

https://github.com/galaxyproject/training-material/issues/989#issuecomment-493642457 All: https://github.com/galaxyproject/training-material/issues/989

https://github.com/galaxyproject/training-material/issues/989#issuecomment-493438843 All: https://github.com/galaxyproject/training-material/issues/989

Add "Volcano Plot" to main (is at EU and included in GTN tutorials)

2

MTS: https://toolshed.g2.bx.psu.edu/view/iuc/volcanoplot/6d532d760950 cc @erasche @bgruening Looks like versions `0.0.2` + `0.0.3` are both exposed in the tool panel at EU. The versions menu for both finds all versions. Maybe on...

GEMINI load 0.18.1.0 fails for missing yml configuration file and database index

37

ORG was recently updated to v 0.18.1.0. It needs to have the updated 2018 annotation indexes added. Choosing either 2014/2015 or 2016 annotation causes failures. **Workaround for users:** Use the...

Standardize the use of Interlaced versus Interleaved (fastq) across tools, help, GUI

1

Cosmetic, but is confusing for users to have both terms define the same data content. Probably involves both devteam + iuc tools. Those that produce AND input this kind of...

Update EdgeR on main to 3.24.1 (most current changeset)

3

https://github.com/galaxyproject/tools-iuc/pull/2284

Additional bcftools for main

1

Original suggestions: https://github.com/galaxyproject/usegalaxy-playbook/issues/167#issuecomment-448585920 

Update Bedtools coverage 2.27.1 once default, help, and sci notation bug fixed

2

Details, test history, etc https://github.com/galaxyproject/tools-iuc/issues/2314

Update annotateMyIDs to version 3.7.0 3/8/2019 version in MTS

2

Issue found/fixed today: https://github.com/galaxyproject/tools-iuc/issues/2319