Juan Eiros

The trajectory is built by generating a markov chain of microstates from the transition matrix that you've estimated. If it looks too jumpy, maybe you need more microstates so that...

My two cents: the first trajectory is used to interpret what molecular 'movement' the first tIC is capturing. For the tutorial example, this corresponds to the 'folding' of the peptide....

Actually, the same thing happens in reverse, if one has saved a dataset as numpy arrays from `msmb` with eight digit-numbering filenames and tries to load it with `load_trajs`: ```...

Hi! The script works well (it activates and deactivates the environments) but when using it with a `GNU bash, version 4.3.42(1)-release (x86_64-apple-darwin15.0.0)`. I get the following errors: ``` $ source...

I've run into the same problem when trying out different clustering algorithms in Pipelines. Is there a better solution than having each one on its own config file? The `dump`...

Thanks for the help @brookehus , the feature selector looks very useful!

Sure! Forgot to do that. Heres the output of `conda list`: ``` # packages in environment at /home/juan/miniconda3: # # Name Version Build Channel alabaster 0.7.10 py36h306e16b_0 ambertools 18.0 0...

Here's a small subset of the data with which the error can be reproduced [dihedrals.zip](https://github.com/msmbuilder/osprey/files/2260460/dihedrals.zip)

Did you manage to replicate the error?

So I think the problem is in specifying a list of integers in a log warped space: ```yaml tica__lag_time: min: 1 max: 1000 type: jump warp: log var_type: int num:...