Juan Eiros
Juan Eiros
Hi there, This package is really useful! Is it feasible to add a way of having the nodes not overlapping? I really want to be able to see them all...
Hi, I've got a results directory with the following structure: ``` S1P/ ├── [ 714] run01 │ ├── [ 102] 0350-0400 │ ├── [ 102] 0400-0450 │ ├── [ 102]...
I use the msmbuilder.org website quite a lot to quickly refer to the docs. However, I've seen that there is no information on the `msmbuilder.lumping` package. However I've seen that...
I think there is an inconsistency in the formatting of the filenames that are saved when using subcommands from the `msmb` command line functionality and the `save_trajs` function of the...
From the [wallpaper manual](http://www.cs.rug.nl/michael/wallpapermanual.pdf), I see that there's the possibility to offset the logo by some amount away from the margin (I want the logo of my uni to be...
Hi, I'm running into an error that I've not seen before. I'm using already-featurized trajectories stored as text numpy arrays, to compare the performance of different featurizers. Here's the osprey...
I'm running Osprey in an HPC facility using the PBS PRO queue system. I'm launching jobs as array jobs, so it is my understanding that multiple workers are accesing the...
Hi, I've found this [paper](https://pubs.acs.org/doi/10.1021/acs.jctc.7b00346) which use Cross Validation and Gaussian Mixture Models to estimate Free Energy landscapes (they also compare them to other ways of estimating the densities), but...
Is there a reason why an [undirected graph](https://github.com/msmexplorer/msmexplorer/blob/master/msmexplorer/plots/msm.py#L86) is built from the transition matrix in the `plot_msm_network` function? I've checked and the edges that are built when using an undirected...