Gregory Jefferis

I just picked up your eLife paper with interest. One point though. I was surprised to note in the methods that the mouse retina soma positions were manually extracted. When...

cutree sort_cluster_numbers

7

HI Tal, First of all greetings for 2016! Now a quick question, which I think may imply a bug in the docs or in the `cutree` function. Something I often...

ids are identifiers not indices. Something like this might be possible: ``` nid

Fix/matching by col numeric

2

* Fixes #503 * but we still need to sort out numeric ids like 1e5, since: ``` > as.character(1e5) [1] "1e+05" ```

This change in #467 introduced a subtle bug: https://github.com/natverse/nat/blob/49d578d65c5290ad7b2e31c9bb5984c7c2126991/R/neuronlist.R#L301 If the first column of the incoming dataframe is numeric then `intersect(nn, value[,1])` will be numeric as well, which will cause...

Add windows build to github actions

2

We have not previously had windows on CI. As @dokato noted, it seems that the [stumbling block for windows was CMTK](https://github.com/natverse/nat/pull/475#issue-686872724). Options 1. add windows without CMTK 2. install using...

Consider adding geodesic_distances function

1

See https://groups.google.com/forum/#!topic/nat-user/3oozKMYg6zY ```r #' Find geodesic distance along neuronal tree from the soma to every synapse #' #' @description Find the geodesic distance (i.e. path length along) the neuron #'...

``` #' "1702336197", "1793744512", "1976565858", "2007578510", "2101339904", #' "5813003258", "2069647778", "1947192569", "1883788812", "1916485259", #' "1887177026", "2101348562", "2132375072", "2256863785", "5813002313", #' "5813054716", "5813018847", "5813055448", "1763037543", "2101391269", #' "1794037618", "5813018729", "2013333009") #'...