Jim Schaff comments

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                                            Jim Schaff

Include species with D=0 in "Post Processing Stats Data"

This would be fairly involved to implement on the solver side (post processing done in C++) but maybe not too bad if done in the data retrieval logic in Java...

Allow for clusters in NFSim

@vcellmike please explain what is requested here.

Expand identification of catalysts with dashed line to situations where catalyst species is part of a gobal parameter

@ACowan0105 are we sure we want this? We have to be careful how we update the diagram and handle event listeners so that we don't make VCell slower than it...

Add right click to search reactions for Reaction Table under add a new reaction

@ACowan0105 for reaction table, not sure a right-click operation is appropriate. Do we want a search box for reaction table?

Implement new GUI design for spatial sim results viewer

can we define the desired attributes/goals for a new spatial results layout.

Allow assignment of .vcml files to open in VCell in macs

this may conflict with wanting to make VCell Client install as a non-administrator.

Create Automatic sim testing for all solvers for new build

The idea here is to construct a biomodel (e.g. one of the Solver Suite biomodels from schaff account) with representative simulations exercising all of the supported solvers. These simulations would...

Create Automatic sim testing for all solvers for new build

This could create a very lightweight substitute for the MathTestingFramework - which is too large to be run often and requires manual interpretation.

Geometry editor bug: padding to add background pixels at edges of domain adds new "background" compartment if original background was renamed in the geometry.

some triage required to identify the issue and estimate scope of work.

NFSim immediately creates an observable for total in a default compartment when molecule created

I suppose that this is not desirable? @vcellmike @danv61 Please explain how vcell behaves now, and what you would like it to do.