reveal

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reveal rem error

2

Hi, When I run reveal of 24 genomes using: ``` $REVEAL rem --64 -t $THREADS data/westar.fa data/kale.gfa data/LT.gfa data/mendel.gfa data/FAFU-ZS11.gfa data/Express617.gfa data/HZAU-ganganF73.gfa data/HZAU-no2127.gfa data/HZAU-quintaA.gfa data/HZAU-shengli3.gfa data/HZAU-tapidor3.gfa data/HZAU-westar.gfa data/HZAU-zheyou73.gfa data/HZAU-zs11.gfa data/NY7.gfa...

Boer223

Use releases

5

Dear Jasper, Would you consider using versions and tagging releases with REVEAL? It would help the package managers, like `conda`, organize things a little better. Cheers, Travis

twrightsman

reveal realign - muscle fails

1

Hi, I'm using reveal realign with muscle to realign bubbles in a graph. `reveal realign --64 --method muscle --all --maxsize 5000 -o $output $input` At some point during the realignment...

ChriKub

When running `python setup.py install`, I got an error indicating that the setuptools zip couldn't be unzipped. When inspecting the downloaded file, I encountered the following: ``` $ cat setuptools-15.0.zip...

doudejans

applicability to large genomes

4

Is reveal capable of generating whole genome alignments for multi-gigabase genomes?

ekg

Extract the alignement to a file ?

7

Hi Jasper, I'm interested in aligning bacterial genome (~ 5Mbp so ~5.2Mo each ) but in order to compare different tools, I wonder if there is a way to actually...

ghost