Jason L Weirather

Same issue here... conda does not work as per instruction. I added biobakery and bioconda to my .condarc and this is still a no-go. ``` conda create -n biobakery2 -c...

Hi @ljmciver thank you for the help. I successfully installed the conda by removing version specification and working from a vanilla base. I was able to run the 16s command...

Hi @ljmciver , thanks for the response, and for making these well documented workflows. I have been able to run the 16s pipeline (without the follow-up visualization command) by building...

Hello @vdauwera , I have a similar use case in Cromwell that I think this could cover. We specifically hope we can mount the `type=tmpfs` volume. This creates a ram...

Thanks @mcovarr! ... I did something similar and it runs well. I just wanted to get the path handling on their radar 😄.

@mcovarr Ran into this again. Not sure how a "User Requested Improvement" sits it in your planning, but I'd suggest this be considered as a bug, not a quality of...

Hi Venkat. Thanks and great package. I saw in the readme a note that said macos build/passing so thought maybe there were some users running it on there too. Unfortunately...

Thanks. Here's the Dockerfile if its ever useful to you (works for the R package and the htslib dependent helper script) i put together. https://github.com/jason-weirather/facets/blob/master/Dockerfile As it is written, you'd...

> Oh the same issue! Sorry for the issues with the conda environment. Its quite an old package, so I would recommend executing through the docker if you are able....

@OnlyHigh Hi Luis thanks for the report. I'll update our documentation to reflect it. We are preparing a manuscript for the tool and I'll look into running minimap2 on the...