`bioconda` package

[PertuyF]

Hi @jason-weirather ,

It seems that you already have a conda package on you own channel vacation, but I have troubles installing from there ("solving environment" takes forever...). Would you mind submitting your recipe on bioconda?

[Snowymint]

Hi @jason-weirather ,

It seems that you already have a conda package on you own channel vacation, but I have troubles installing from there ("solving environment" takes forever...). Would you mind submitting your recipe on bioconda?

I have the same issue.

[shaghayeghsoudi]

Oh the same issue!

[jason-weirather]

Oh the same issue!

Sorry for the issues with the conda environment. Its quite an old package, so I would recommend executing through the docker if you are able.

For example

$ docker run -u $(id -u):$(id -g) -v $(pwd)/example_data/:$(pwd)/example_data/ vacation/alignqc:2.0.5 alignqc analyze -g $(pwd)/example_data/chr21chr22chrM.fa.gz -t $(pwd)/example_data/chr21chr22chrM.gencode25.gtf.gz $(pwd)/example_data/chr21chr22chrM.bam -o $(pwd)/example_data/myoutput.xhtml

Docker hub link: vacation/alignqc:2.0.5