Julie Iskander

icon indicating a website link https://draft.blogger.com/blog/posts/5306905461866579521

icon company WEHI icon location Australia icon location I am mostly a software engineer, and also a biomechanist, trying to go into bioinformatics but mainly an engineer.

Results 3 issues of Julie Iskander

nextflow nextflow/23.04.2 and tower.yml

9 comment

## Bug report ### Expected behavior and actual behavior Inlatest version trying tower.yml as described here https://seqera.io/blog/best-practices-for-deploying-pipelines-with-nextflow-tower/ gave a java error ``` ERROR ~ 'com.fasterxml.jackson.core.io.ContentReference com.fasterxml.jackson.dataformat.yaml.YAMLFactory._createContentReference(java.lang.Object)' -- Check '.nextflow.log' file...

psipred4 missing

1 comment

When I calculate Rosetta interface metrics by running sbatch --mem 5g --wrap "../../scripts/get_interface_metrics.py output/run2/trf_relax/" I get sh: /software/psipred4/runpsipred_single: No such file or directory How can I install psipred4?

DAlphaBall missing

3 comment

When running the get_interface_metrics.py? I get the following error sh: /software/rosetta/DAlphaBall.gcc: No such file or directory sh: /software/rosetta/DAlphaBall.gcc: No such file or directory From where should Iget the DAlphaBall?