Krithika Iyer
Krithika Iyer
Would you please provide a "requirements.txt" for the python packages and their versions used in this repository
This relates to the lesion screening experiments done in the "[Benchmarking off-the-shelf statistical shape modeling tools in clinical applications](https://www.sciencedirect.com/science/article/pii/S1361841521003169)" paper. Given a shape model trained on control subjects, a pathological...
It would be nice to have a cloud notebook where the users can run the examples without installing anything on their end. Example : [Deformetrica collab notebook](https://colab.research.google.com/drive/1ZYArpukrdp_SsRh-cW6PXJNaLEt1Tafr#scrollTo=mBC5nNWwAhC5) Figure out: -...
The use case has a few commands which are hardcoded. - done The necessary commands should be consolidated and replaced with the python API calls - done The following commands...
The verification code uses sw.ParticleSystem() to read particle files where it doesn't consider the domains per shape and reads all particle files together. Using project files/swproj files to read particles...
As per #1235 the following features/changes are required for studio: - [ ] Detecting if an input file is contour. Currently the number of points in the first cell of...
Options to enable shared boundary and set the weighting across domains in studio. Currently [hardcoded here](https://github.com/SCIInstitute/ShapeWorks/blob/a36280296d137a9c40034fd18a50ffa99e4803e8/Libs/Optimize/OptimizeParameters.cpp#L227). - This controls the distribution of the particles around the shared boundary and contour....
If the segmentation is too noisy the the isolate function fails as it is unable to handle the large number of connected components. ITK filter by default labels each non-zero...
There are few issues to the image-based registration (because we are assuming we don't have access to ground truth surfaces during inference) process followed for evaluation: 1. Function: `get_image_registration_transform` -...
Could we add something like this to `readDICOMImage` to access DICOM series ID? ``` PixelType = itk.ctype('signed short') Dimension = 3 ImageType = itk.Image[PixelType, Dimension] namesGenerator = itk.GDCMSeriesFileNames.New() namesGenerator.SetUseSeriesDetails(True) namesGenerator.AddSeriesRestriction("0008|0021")...