Krithika Iyer

For reference: Running `export CC="gcc-12"` and `export CXX="g++-12"` before running build dependencies can be helpful

Error looks like: ``` /ShapeWorks/dependencies/build/vtk/IO/Image/vtkSEPReader.h:33:12: error: use of enum 'EndiannessType' without previous declaration 33 | enum class EndiannessType : std::uint8_t | ^~~~~~~~~~~~~~ /ShapeWorks/dependencies/build/vtk/IO/Image/vtkSEPReader.h:33:27: error: expected unqualified-id before ':' token 33...

Questions: 1. There are 4 domains per shape in the use case - left, right, shared surface meshes, and boundary loop contour. How to update `OptmizeUtils.py` for such a use...

> @iyerkrithika21 , has this been completed? We have implemented the shared boundary use case in python but two issues remain open: 1. https://github.com/SCIInstitute/ShapeWorks/issues/1234 This is a general issue with...

Conda Env in Collab Notebook: https://towardsdatascience.com/conda-google-colab-75f7c867a522

[Binder](https://mybinder.org/) could also be considered for hosting the notebooks. We need to consider deep learning use cases and how these can be run on remote notebooks

> > > Thanks, @medakk , good example. We will need to add the nrrd files to our tests (once we have the checks) I can share the files which...

Not sure if you have covered this scenario in the previous comments. When a list of meshes/segs/images is passed to the optimize function, it should check if the list is...

When running a use case with segmentations/dt images, if the parameter dictionary has domain type "mesh" then the `optimize` command breaks with the message unable to read the file.nrrd. It...

In the last Cardiology meeting Jake had a question regarding the size of the datasets. Do we have any specifications for that ? And do we need to include pathological...