Iñigo Prada-Luengo

This came to my mailbox after @bobbyAtSperry comment. In case it is helpful for you "_Edlib does not guarantee to find all the best results, but for some reason it...

Hi, I am really sorry for answering so late, I missed the email notification Sorry for not explaining my self well before. I have go trough the problem by masking...

Hi, Read alignments to repeats and multi mapped regions should be handled by the probabilistic model. Reads with low probabilities are filtered out by default. best, Inigo

Dear a student, ;) I will be happy to help, however, I will need more information: - Type of data: protocol, circle enrichment procedure (if any)... - Scientific question you...

Dear @jinyung, You are absolutely right. I wish 6 years ago Inigo was a better programmer. Right now I am busy with other projects, and have limited time to dig...

Dear Juncheng, Thanks a lot for using Circle-Map. Regarding: > what's the difference between Realign and Repeats modules, which one is the best to calling eccDNA using WGS data? The...

Dear Juncheng, I assume the log you are showing is the log output of the command you show above: /public/software/Anaconda3/bin/Circle-Map Realign -t 20 -i S1_sort_circular_read_candidates.bam -qbam S1_qname_unknown_circle.bam -sbam S1_sorted_unknown_circle.bam -fasta...

Dear Junchend, I usually do not read my emails in the weekend. I will answer you mail in a few minutes. I have also edited your post to remove my...

Dear Junchend, Thanks a lot for the nice words. I have been working on a new version for a while, and I hope to get that soon over the next...

HI @panxiaoguang I am copying and pasting from issue #37 " I have been looking a bit into the code to see what is going on and I have narrow...