cannot use absolute path in ReadExtractor

[jinyung]

Hi Inigo,

I think this is inconvenient to users used to using absolute path in their script: https://github.com/iprada/Circle-Map/blob/ed88ff67634389f70aefc0b4e94566bc20897a16/circlemap/extract_circle_SV_reads.py#L64 https://github.com/iprada/Circle-Map/blob/ed88ff67634389f70aefc0b4e94566bc20897a16/circlemap/extract_circle_SV_reads.py#L88

Best regards JY

[iprada]

Dear @jinyung,

You are absolutely right. I wish 6 years ago Inigo was a better programmer.

Right now I am busy with other projects, and have limited time to dig into this. Would you be up for making a pull request?

I'll gladly accept one!