Iñigo Prada-Luengo

ey FeiLiuEM, Thanks for you kind words. I appreciate :) Circle-Map clusters split reads intervals (i.e. eccDNAs) that *reciprocally* overlap by 0.95 percent. Therefore, if there are nested structures it...

Glad to hear. Happy circle hunting! Iñigo

Hi, No, assumes BWA MEM as input. best, Iñigo

Hi, You will have to elaborate a bit if you want help. I should not be guessing best, Iñigo

Hi, The error corresponds to bam2bam. Not ReadExtractor. I am very happy to help the community to the extend I can but you have to put an effort if you...

Based on the error your file paths are too long. Also, bam2bam never left the experimental phase

Hi, Thanks for putting this into a pull request! Can you elaborate a bit over what you changed/fixed? best, Iñigo

see https://github.com/iprada/Circle-Map/issues/77

it highly depends o the research question as some things assume reads are independent. For circle map side, do not remove anything. best, Iñigo

Hi Laura, First of all: thanks for your kind words. I am happy to hear you find it helpful! Regarding the issue you encounter, the problem is on Circle-Map side....