cellxgene_VIP
cellxgene_VIP copied to clipboard
interactivereport
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also pe...
Hi there, I'm trying to use cellxgene on my single-cell multi-omic (RNA+ATAC) dataset and my spatial transcriptomic dataset. I was wondering what is the preferred data input format for cellxgene...
These commits modify the server-side Marker Genes callback MARK to return the keys pts, pts_rest along with previously returned statistics. These keys correspond to the fraction of cells in the...
Dear cellxgene_vip authors, I am looking into the script used for DEG analysis VIPInterface.py and can't figure out where function "compute_diffexp_ttest" come from. I guess it is corresponding to the...
- removed nested css styles because css nesting is supported from chrome version 112. To use nested CSS style in Chrome 111 or lower, you may need a transpiler.
Hello VIP team, I have been tasked by my structure @bag-cnag to make VIP plugging work for cellxgene. I am sharing the result here, and am offering to contribute it...
When I run cellxgene I get the button and everythiing but when I try to make a violin plot or any other plot I get an error. This is what...
Hello, I seem to be having an issue with opening h5ad files that have a small number of cells recorded - when I subset working h5ad files to 9 cells,...
Metadata
Owner
Metadata
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also pe...