Oliver Schwengers

Hi @daisy238, this is interesting. Can you check if you can manually execute DeepSig within the activated environment? If this is the case, could you then please execute Bakta with...

Hi @daisy238 , is this still active? Do you have any updates on that?

Hey Michael, thanks for the report. I guess this is not a bug in Bakta, but actually a simple dependency conflict in Mamba. DeepSig has several dependencies to pinned old...

As @MiSchwabe pointed out, this is _not_ a bug in `Bakta`, but a conflict with `DeepSig`'s Python/Tensorflow dependency versions and other Bakta dependencies. The solution is: 1. Create a lean...

Hi @Jigyasa3, thanks for reaching out with this. Yes, you're perfectly right, Bakta conducts a simple Blast search of the oriC/oriV sequences from the DoriC database followed by a majority...

Hi @nick-youngblut, thanks for the heads-up. Unfortunately, ARM support for MacOS is a constant error source for Conda envs. As this is not directly related to ReferenceSeeker but external dependencies...

Would also love to see this on the gene prediction side. However, I can image, this is a non-trivial task. A bit of #shameless-plug since I'm the main developer but...

Sorry, for the late reply! I just opened a PR to @conda-forge: https://github.com/conda-forge/staged-recipes/pull/20798 The PR template contains a couple of questions regarding statically linked 3rd-party libraries that might be used...

@tweedge Unfortunately, I got stuck in the Windows CI tests. I'm neither a windows user nor do I have much experience with Python/C hybrid projects. Could you maybe have a...

OK, I skipped the builds for `Win` and `arm64` systems and requested a review. Let's see what we get.