Oliver Schwengers

Hi @tweedge , sorry fore the very late reply. There were a comment regarding different licenses: https://github.com/conda-forge/staged-recipes/pull/20798#discussion_r1038661167 Essentially, they ask if you could add the original Unishox2 license into your...

Hello Jenna, thanks for using ASA³P. Due to your logs there seems to occur an internal issue with Singularity. I'll try to reproduce this with a fresh local setup. In...

Hello @jennahamlin , sry for the late reply. I'm still trying to figure out what's going on - so far without a hint. But I'm currently thinking of rewriting the...

Hi, thanks a lot for reporting this. Unfortunately, we only have very limited access to Mac hardware not including M1 so far. Thus, I currently cannot test/reproduce/debug it. Can you...

Hi @telatin , very nice piece of help! Thanks a lot - it's indeed very much appreciated. I'll give it a try and add it to the ASA³P readme. Until...

Hi @abdeljalil-senhaji , that's true! I'll put this on my list so we will try to distribute the `local` version via `BioConda`. However, this might take a while...

Hi George, due to the assembly log file there is an internal bug within the Daligner tool of the SMRT package (HGAP). Unfortunately, I cannot further deep dive into it...

Could you provide the log files of the example-lmonocytogenes run?

Hello @gtsiamis , sorry for the late reply, but I still need the log files. It looks like you maybe responded via email? If this is the case, it doesn't...

Hi Ahmed, Of course, short/long read sequencing indeed can have a strong impact on assembly lengths. Especially short read draft assemblies can suffer from too many contig edges which make...