Oliver Schwengers

@pbelmann A bit late, but better than never ;-) https://github.com/oschwengers/platon/releases/tag/v1.7 should be available via Conda in a couple of minutes/hours.

Thanks @pvanheus for bringing this up again. Actually, this just slipped down my priority list. But if there is still a need for and interest in that, I would try...

Hi @EricDeveaud, coming back to this. Due to some recent breaking changes in the AMRFinder db (and there might be more to come) I tend to stick to the idea...

Thanks for the heads-up: https://www.ncbi.nlm.nih.gov/research/cog/cog/COG2315/ -> `K - COG2315 - Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family` what the heck...

I'm still not sure how to fix this. And in addition, I'm a bit reluctant to add unique string fixes to the Bakta code for each wrong COG annotation -...

Hi @bbuchfink , thanks for keeping this great software maintained. I can confirm that `v2.1.9` introduced a bug letting Diamond constantly crash with a segmentation fault (error code -11) I...

Ok, since more and more users ask for a feature like this, I've started a new issue #250 collecting ideas and requirements. Feedback and input is highly welcome!

OK, Having a deeper look into this, and merging #250, I think we can address some of the use cases you've described above: 2. For a single genome of interest,...

> Is there any official guideline for auxiliary scripts? Like dependency management, coding style, testing needs... Not yet, but in a nutshell: - Dependencies: I'm reluctant to introduce any new...

Hi and thanks for reporting. This is odd. Bakta checks the return code when executing external processes if they are `!= 0` and for some reason Circos/Perl seems not to...