nipype

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### Summary It should be beneficial to have an interface for MRTrix's [`tcksift`](https://mrtrix.readthedocs.io/en/dev/reference/commands/tcksift.html) as part of the overall effort to include as many as possible of the tools being used...

GalKepler

Must Obtain Valid Freesurfer License

1

### Summary I'm trying to run the commands ``` ft = EulerNumber() ft.inputs.in_file = "path_to_my_file" ft.run() ``` ### Actual behavior I get an error: ERROR: Invalid FreeSurfer license key found...

JBarsotti

Changed inheritence of TensorMetricsInputSpec

1

## Summary Simply changed the inheritance to the correct one (`TensorMetricsInputSpec` instead of `CommandLineInputSpec` Fixes #3662.

GalKepler

### Summary The TensorMetricsInputSpec doesn't inherit from MRTrix3BaseInputSpec, making some of the basic inputs unavailable for this class. ### Actual behavior The specifications inherit from the CommandLineInputSpec. ### Expected behavior...

GalKepler

### Summary The link to some [self-assessment](http://nipy.org/workshops/2017-03-boston/review.html) on the [Quickstart page](https://nipype.readthedocs.io/en/latest/quickstart.html) seems to be broken.

joey-scanga

The module will be removed from Python 3.13: https://docs.python.org/3.13/whatsnew/3.13.html#pep-594-dead-batteries-and-other-module-removals

penguinpee

[ENH] Added available inputs for MRTrix3's 5ttgen

2

## Summary Just a small addition of inputs to match those available through the [original implementation of MRTrix3](https://mrtrix.readthedocs.io/en/dev/reference/commands/5ttgen.html). Fixes #3657. ## List of changes proposed in this PR (pull-request) Just...

GalKepler

### Summary Current implementation lacks some inputs that are available through the original command ([MRTrix3's `5ttgen`](https://mrtrix.readthedocs.io/en/dev/reference/commands/5ttgen.html)) ### Actual behavior Currently only `in_file`, `algorithm` and `out_file` are available as inputs. ###...

GalKepler

traits.trait_errors.TraitError: Each element of the 'in_files' trait of a SmoothInputSpec instance must be a pathlike object or string representing an existing file, but a value of 'xxx’ <class 'str'> was specified.

8

### Summary When running a script using `smooth.inputs.in_files`, an error occurs indicating that the `in_files` trait must be a pathlike object or a string representing an existing file, despite the...

abcvav

Fix nipy#3653 and nipy#3654 in the CAT12 Interface

1

## Summary Fixes [nipy#3653](https://github.com/nipy/nipype/issues/3653) and [nipy#3654](https://github.com/nipy/nipype/issues/3654). ## List of changes proposed in this PR (pull-request) * Added input trait for the option of no surface measures (noROI) in the CAT12...

JailanOweda