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Workflows and interfaces for neuroimaging packages
@Shotgunosine and I have been working on updating and adding various AFNI interfaces, and just finished talking about how to deal with one of the main issues that we've found...
Hi all, So something I've been looking into is whether or not to make Julia or python versions of either SPM-NIRS or the nirs-toolbox so that I can use them...
nipype noob here thank you for developing this software packages its very help but I am running to into simply problem by reading in a source_dir PAT001 containing 201 dcm...
Thank you so much for such a great package! If I want to use Nipype for fMRI analyses based on SPM or FSL for example, does installing Nipype in a...
### Summary When I run FSL FAST, I get my segmentations output, but have an error which stops me from running FAST in a loop. ### Actual behavior When I...
### Summary Hello everybody, I'm going to implement the flags for the [Freesurfer longitudinal pipeline](https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing) in [ReconAll](https://github.com/nipy/nipype/blob/6d8efd74f7f019298c00f5486db479fef5657561/nipype/interfaces/freesurfer/preprocess.py#L633). I would like to ask if there is interest in a pull request...
### Summary The interface to MRTrix3's mrconvert is missing some useful options (like gradient tables' import & export) ### Actual behavior The basic inputs of mrtrix's interface include out_bvec and...
In our efforts to port more of Clinica to nipype, we are faced with a challenge regarding our use of `mri_surf2surf`. We are using `mri_surf2surf` in a [similar way](https://github.com/aramis-lab/clinica/blob/41e2c2b0d644859a815fea8f6113a6d814293c19/clinica/pipelines/pet_surface/pet_surface_utils.py#L517) as...
### Summary `distutils` is deprecated. I'm vendoring `LooseVersion` in #3458. However there are many places we use it where [packaging.version.Version](https://packaging.pypa.io/en/latest/version.html#packaging.version.Version) would be more appropriate. We need `LooseVersion` to handle non-Python...
### Summary We have some functions in `filemanip` that exist because they were not handled in the standard library or included features that we wanted to backport. We should go...