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Workflows and interfaces for neuroimaging packages
the default value for -m argument in dcm2niix is 2 and possible values are 0,1,2,y,n where 0=, 1=y and 2 is described as auto and is an intermediate behaviour so...
in ProbTrackXBaseInputSpec the random_seed input is set as a boolean, instead it should be a number used to initialise the random number generator and it's useful in the setting of...
Proof of concept for #3149 This is a very rough draft of how such an interface would look like. It only tests automatic templated names filling (glob patterns should be...
## Summary Fixes #3140 . ## List of changes proposed in this PR (pull-request) added `name_template`, `name_source` and `kepp_extension` to `out_matrix` ## Acknowledgment - [X] \(Mandatory\) I acknowledge that this...
## Summary Addresses #3138 in the short term. ## List of changes proposed in this PR (pull-request) removed `use_default=True` for `rescale_intensities` input ## Acknowledgment - [X] \(Mandatory\) I acknowledge that...
This is related to issue #2844 that I raised, more details is provided there. In summary, using `concatenate_runs = True` results in an error as regressor names are missing for...
## Summary Attempts to fix https://github.com/nipy/nipype/issues/948 -- its 4 years later and we are still having this problem! I slightly modified @oesteban 's original commit with a flag called `checksize`,...
## Summary 4dfp tools produces `.dat` files of the following pattern: ``` #mat2dat sub-MSC01_ses-func02_task-rest_bold_xr3d.mat #$Id: mat2dat.c,v 1.16 2018/06/23 23:46:39 avi Exp $ #frame dx(mm) dy(mm) dz(mm) X(deg) Y(deg) Z(deg) scale...
turning interfaces into a callable to support dask based operations.
This is WIP fixing #2606. Changes proposed in this PR: - import the module `geomstats` to perform computations on manifolds, like the space of frame displacements in 3D which is...
