nipype
nipype copied to clipboard
nipy
Workflows and interfaces for neuroimaging packages
### Summary It would be helpful to have support for [mideface](https://surfer.nmr.mgh.harvard.edu/fswiki/MiDeFace) a command-line tool for defacing MRI scans in Freesurfer. This addition could enhance existing BIDS apps, such as [BIDSonym](https://github.com/PeerHerholz/BIDSonym/issues/67)....
### Summary I am trying to write tests for nipype workflows, and I would like to use `get_node()` to select nodes' outputs, rather than hardcoding paths to output files. However,...
> Looks like CI is broken; apologies. @ghisvail If you have time to look into this, it would be appreciated. Otherwise I'll get to it this week. It looks like...
nipype.algorithms.modelgen.SpecifySPMModel can't handle relative filepaths when being inside a node
### Summary This issue is potentially related to #3301. I would like to use `nipype.algorithms.modelgen.SpecifySPMModel` to set up my design matrix. I noticed that the class itself is able to...
### Summary I'm trying to use aal3.nii as own atlas in CAT12Segment: ``` Python seg.inputs.own_atlas = [os.path.abspath(os.path.join('data', 'bin', 'aal3.nii'))] ``` But after adding this line, an error occurred when running...
### Summary dcm2niix supports file cropping using -x argument (crop Boolean input in nipype) ### Actual behavior the converted_files output does not include cropped files. dcm2niix interfaces intercepts filenames checking...
### Summary Avoid crashes due to AFNI version parsing, by using a better option to get the version number directly. ### Actual behavior `afni --version` in nipype/interfaces/afni/base.py gives a complicated...
Currently it will fail with good number of errors etc to fix up. Let's see if workflow works and shows them.
### Summary Setting a non iterated input field on a MapNode within a Workflow manually does not work correclty, while it does work with a normal Node. ### Actual behavior...
### Summary MultipleRegressDesign takes in an argument for regressors, for which you provide a dictionary of keys (like group membership, strings) and lists of values (floats). But, the design matrix...
