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reconall node error

1

I am trying to add a reconall node to my workflow but after some hours I get this error. I can use reconall command without error. My Nipype version is...

lamaresh

DataSink substition does not remove substituted directory

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### Summary When using (regexp) substitutions (e.g. `substitutions=[("old", "new")]`), an empty directory will be created that corresponds to the directory name that is substituted (e.g. `old`), in addition to the...

fladd

ModuleNotFoundError: No module named 'nipype.workflows.misc'

1

### Summary I’m currently learning to find fmri confound through nipype when I run this code: from nipype.pipeline.engine import Workflow from nipype.pipeline import engine as pe from nipype.interfaces import fsl...

roya2022

Fixed bug for work dirs longer than 255 characters, fixes #2061

1

## Summary This change is fully backwards compatible and will not affect existing pipelines, but it will prevent the pipeline engine from crashing when some parameters are long and it...

prioux

[ENH] Added some options to mrconvert's interface

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## Summary The MRConvert interface now includes some additional available options allowed by the original [MRTrix3's CLI](https://mrtrix.readthedocs.io/en/dev/reference/commands/mrconvert.html). Fixes #3473. ## List of changes proposed in this PR (pull-request) The interface...

GalKepler

RFC: Change parameterize_dirs to default to False?

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> Would you ever consider setting parameterize_dirs to false as a default in nipype? We are working on integrating MRIQC into CBRAIN (http://www.cbrain.ca/), and have run into an issue with...

effigies

File(exists=True) in output specs can cause failures after unused outputs are cleaned up

1

### Summary If an `output_spec` contains a trait `File(exists=True)`, and that output field is not passed as an input to another node, then the file will get cleaned up by...

effigies

### Summary Bug reports on nipype workflows are becoming essentially useless, as the exceptions now wrap around the original exceptions and we get very little traceback information. Further, the crashfiles...

effigies

Error when running nipype-tutorial container in VScode

4

### Summary Thanks for developing this amazing tool. I'm new to nipype and docker and trying to set the tutorial container up in Vscode, however, when I run the following...

yufang1039

ENH: Enable orthogonalization in SPM models via SpecifyModel

13

## Summary SPM 12 has an option to switch off the default orthogonolisation of parametric regressors, but it seems that option cannot be set from Nipype - I implemented it...

hstojic