nipype
nipype copied to clipboard
nipy
Workflows and interfaces for neuroimaging packages
### Summary Hi fellow Nipype users, ### Expected behavior I’m currently experiencing trouble in my Nipype pipeline using the Reorient node from the nipype.interfaces.image module. I want to perform LPS...
Hi, I am having issues running Compcor on some of my fmri sessions. I get the following error on 2 out of 10 days of scanning only, in all runs...
### Summary generate_gantt_chart fails on generating charts based on profiler log file ### Actual behavior Exception occurs: > Traceback (most recent call last): File "./profiler_chart.py", line 2, in generate_gantt_chart('/mnt/connectomics/profiler.log', cores=4)...
### Summary Support for FUSE filesystem for workdir ### Actual behavior Workdir reads and writes many intermediate files, with higher than normal latency. This leads to workflows failing due to...
## Summary Fixes #3288 ## Acknowledgment - [x] \(Mandatory\) I acknowledge that this contribution will be available under the Apache 2 license.
### Summary I was trying to use the Slicer BRAINSResample interface and needed to make two main changes to the interface class definition: 1) The first change was to the...
Building backport for debian stable (buster) with python 3.7 leads to test_copy_header to error with ``` ____________________________ test_copy_header[True] ____________________________ tmp_path = PosixPath('/tmp/pytest-of-pbuilder/pytest-0/test_copy_header_True_0') keep_dtype = True @pytest.mark.parametrize("keep_dtype", (True, False)) def test_copy_header(tmp_path,...
In my experiment subjects took part in several fmri sessions on different days. However, some subjects could only attend some of the sessions whereas others attended all of them. I'm...
#3154 saw some reductions in testing scope to avoid hanging tests, which presents us with Python 3.7's EOL as a kind of bit-rot cliff. It looks like we're not the...
`select` doesn't work on `stdout`/`stderr` in Windows. We'll need to move to `asyncio`, I believe. ----- _Originally posted by @axiezai in https://github.com/nipy/nipype/issues/2509#issuecomment-733974431_ I just pointed the dcm2niix example to an...