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nipy
Workflows and interfaces for neuroimaging packages
Hi, I don't know how relevant this might be, but given that the `_cosine_drift` function was originally copied from nipy, it seems that nipype is currently exhibiting the same issue...
Hello, Are PALM or randomise (FSL) supported by nipype ? Thank you!
### Summary I try to use nipype.iterfaces.spm.Coregister(), but I got the following error ### Actual behavior ValueError Traceback (most recent call last) ~\Desktop\fmri\lib\site-packages\nipype\utils\spm_docs.py in _strip_header(doc) 48 hdr = 'NIPYPE' --->...
Efforts in MRIQC to minimize the baseline process size were resulting in meager gains until I found this. Delaying the import of either module allows reducing the baseline drastically.
With the migration to ``concurrent.futures`` we lost one valuable tool to keep memory at bay -- restarting the worker process after every single task. In conjunction with the fork server...
https://github.com/nipy/nipype/blob/ecd5871b64159e02d81af28ecc710b508b7960be/nipype/interfaces/fsl/dti.py#L440-L444 The current documentation for bedpostx shows several input variables being set (e.g bvecs, bvals, dwi, mask, n_fibres), but in the example bedp.cmdline run, only n_fibres appears to be passed....
When any of the dimensions of the images has odd number of pixels, topup crashes: ``` Topup: msg=topup_clp::topup_clp: Subsampling levels incompatible with image data ``` It'd be great if the...
I'm using SPM functions for the 2nd level analysis and would like to use a covariate. For example, `OneSampleTTestDesign` has an optional covariate argument: ``` covariates: (a list of items...
### Summary I can't get Matlab/SPM to work properly. Matlab's run script throws a runtime when calling `spm.Info.name()`. ### Actual behavior Calling `spm.Info.name()` throws an error. `mlab.run().runtime.stderr` (in nipype.interfaces/spm/base.py) returns:...
### Summary After updating Nipype to 1.7 from 1.6.1, SPM/Matlab setup gives en error ### Script/Workflow details Running this code with 1.7 ``` matlab_cmd = '/opt/spm12-r7771/run_spm12.sh /opt/matlabmcr-2019b/v97/ script' spm.SPMCommand.set_mlab_paths(matlab_cmd=matlab_cmd, use_mcr=True)...
