SalmonTE

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job execution failed

5

I tried salmonTE with another computer, macOS 12.4 and got a different error: ./salmonTE.py quant --reference=hs example 2022-06-19 12:47:02,064 Starting quantification mode 2022-06-19 12:47:02,064 Collecting FASTQ files... 2022-06-19 12:47:02,064 SalmonTE...

sulevk

SalmonTE example doesn't work

1

Thank you for the salmonTE, great tool. However, running it is a bit cumbersome. After installation I tried to run example and got this: ./SalmonTE.py quant --reference=hs example 2022-06-19 12:39:55,355...

sulevk

Exiting because a job execution failed.

2

Hello, Thanks for developing this powerful tool! I got an error when I run `SalmonTE.py quant ` mode: It looks right when do salmon quant but didn't generate any EXPR.csv...

Bioleonard

Bioconda support

7

To make it easier to install SalmonTE a Bioconda package (https://github.com/bioconda/bioconda-recipes) would be great. Thanks for all your work!

bgruening

Cannot run SalmonTE in Snakemake pipeline

6

Hello, I get an error about locking the results dir when running SalmonTE in Snakemake pipeline. I forked the repo and got it to run by disabling SalmonTE directory locking....

ftabaro

Arabidopsis Reference

2

Here is the Arabidopsis reference built.

EsperanzaDai

Addresses #46

ftabaro

Extract Reads similar to TE sequences

2

Hi, Would it be possible/easy to incorporate an option where SalmonTE outputs a file containing the reads used to generate the TE count file for each fastq file? I want...

juanb001

Error using SalmonTE

11

Hi again, I am actually still facing an issue with the mouse data I have. When I try to run on a set of fastq files downloaded from NCBI I...

SalimMegat

Hi, Hyunhwan. I have a issue with output of statistical analysis. For the ma.polt.png files, it showed black dots and red dots. My plot showed many red dots. I am...

Xiangruc