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I am analyzing self-collected datasets of single-cell scRNAseq and single-cell ATACseq. The two datasets were obtained separately. I integrated single-cell transcriptomic data and single-cell ATAC data following the workflow provided...

Tianran1998

Embedding cells and genes for post-training analysis takes a long time

1

Hi, I was following the documentation to do the scRNA-seq analysis, but for the post-training analysis, it took a long time for me to embed the cells and the genes,...

JunxiFeng

Using SIMBA with partially paired Multiome data

1

Good day! I would like to know whether it is possible to use SIMBA in cases where one has partially paired data (some data has only scRNA, others only scATAC...

ccruizm

Hi, I replicated [the SIMBA tutorial on the Multiomics integration of the 10x PBMC datasets](https://simba-bio.readthedocs.io/en/latest/multiome_10xpmbc10k_integration.html) and I got three embeddings instead of four. Specifically, I got embeddings for "C", "G",...

AmirTEbi