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One more thing: both **PCAtools** and **EnhancedVolcano** only suggest **ggalt**, so getting rid of this dep should be easy.

Thanks @kevinblighe Good to know about **EnhancedVolcano**. For **PCAtools**, the maintainer would need to be changed to someone who is willing to actively maintain the package. Please discuss with @LTLA...

I agree that this is unfortunate. We will deprecate **EnhancedVolcano** and **PCAtools** in BioC devel. However, the original issue still persists and can only be addressed by fixing **PCAtools** in...