Hervé Pagès

Hi @kathiwaury, Thanks for making these changes. I can't reproduce this warning on my laptop where I have the latest version of **BiocCheck** (1.41.9). Note that the SPB was using...

Thanks!

Sounds like a reasonable request and a good feature to have IMO. Putting some timings here for reference: ``` library(Biostrings) library(hgu95av2probe) probes

Yep, `limit` sounds good. Could also be used in the future to request the last 2/3/4/n entries by letting the user specify a negative value if there's interest. Thanks!

Hi, The reason for what you observed is that `BSgenome::getSeq()` tries to avoid copying the sequence data from the original object when it can. More precisely, when a promoter sequence...

The avoid-copying-sequence-data-if-possible approach in **Biostrings** was decided and implemented a long time ago (about 18 years ago or so). In most situations, it helps make things extremely fast and memory-efficient....

Finally fixed in **Biostrings** 2.79.2. Thanks @ahl27 for https://github.com/Bioconductor/Biostrings/pull/130

If a package A decides to depend on **tidyprint** it's because they want the printing functionality provided by **tidyprint**. Now if you disable that functionality when **tidyprint** gets loaded only...

Hi, We investigated the situation with **BayesSpace**'s timeout on our Linux builder (nebbiolo2), and we discovered a few things. The `enhanceFeatures()` function in **BayesSpace** is mutithreaded, and, by default, it...

**ggalt** was removed from CRAN in August: https://cran.r-project.org/package=ggalt This breaks Bioconductor packages **PCAtools** and **EnhancedVolcano** (both maintained by Kevin Blighe), as well as any package that depends directly or indirectly...