heylf
heylf
Dear @shiltemann @bgruening @lldelisle, I need some revision for the CUT&RUN training material. - [ ] Test data is ready (two replicates paired-end, down sampled and a ChIP-seq peak file,...
There is a tool from the MEME suite collection called [SpaMO](https://meme-suite.org/meme/doc/spamo.html) that might be quite useful for secondary motif detections. The tool is also integrated in MEME-ChIP, which exist in...
### Description of feature This goes hand in hand with the issue for CITE-Seq (https://github.com/nf-core/scrnaseq/issues/99). Does it make sense to also try to integrate ATAC-Seq data support in the pipeline...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...
I tried to install shorah via bioconda (conda install -c biconda shorah) and executing shorah will give the following error: `pkg_resources.DistributionNotFound: The 'shorah' distribution was not found and is required...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
### Description of feature Just wanted to put it down and mention that I am currently working on the implementation of cellranger-arc (modules + subworkflow). Maybe worth to discuss if...
COSG
FOR CONTRIBUTOR: * [X] I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [X] License permits unrestricted use (educational + commercial) * [X]...
FOR CONTRIBUTOR: * [X] I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [x] License permits unrestricted use (educational + commercial) * [...