Michael L Heuer

> Do those changes work with the version used in the book? Does the book listing work with the version it used? For better or worse, the book builds from...

Thanks for the comment, @luben! I am waiting for advice on the native-image Slack channel, will keep this updated if I find anything that works.

Hello @danielkec, would such a change allow for a workaround? I've since updated to version `1.4.5-12` and this is still an open issue.

Just for the record, there is support for counts and distributions in biojava 1.x http://biojava.org/wiki/BioJava:CookBookLegacy#Counts_and_Distributions

To add to the suggestions already made: - Use default java serialization (even if not the best format, this should be made to work) - Add annotations to support JSON...

+1 to a new module. Feel free to crib from this [pom.xml](https://github.com/heuermh/dishevelled-bio/blob/master/tools/pom.xml), it uses templating-maven-plugin for access to build information at runtime and the appassembler plugin to create command line...

Good questions, @phidias51! I would propose the tool module depends on all the other modules, so all the cli classes and scripts would be in one place. There should also...

ServiceLoader seems like overkill to me, and if the command implementations were spread out across more than one module and discoverable only at runtime, then I don't see how the...

Ah, I see. Looks like this might be a case of whomever codes it first wins. 😉

+1 from me