Dan Handwerker

In testing out the method, my suspicion is that, if it doesn't converge with one starting seed, it often won't converge with another. The parameter that likely will make a...

@ME-ICA/tedana-devs Today at 2:00PM EST ([Your time zone](https://www.timeanddate.com/worldclock/fixedtime.html?msg=tedana+decision+tree+modularization+merge&iso=20230511T02&p1=2214&ah=1)), we are are planning to relase the last version of tedana before the major refactor (v0.0.13) and then merge this PR and...

I'm not sure I want to deal with an automated updater just to replicate information from the release notes. I could see adding an RTD page that includes the info...

Is this still a tedana issue or has it been resolved on the fMRIPrep side?

I don't love the idea of a `low-mem` option changing the underlying algorithm without clearly saying that. I also looked at the code and the nonlinear fitting should be slower,...

I'm trying to go through old issues to see what we can address. I can definitely add fmrwhy to the docs, but it looks like it hasn't had any commits...

The elbow information will be added when #756 is merged, so that part of this issue will be resolved. Adding the variance info to the reports would require a few...

My assumption would be that censored volumes are calculated in AFNI or fMRIprep before tedana is run and then the list of volumes to censor would be an input to...

@afni-rickr The ICA step is run on the OC data but is then fit to information across the echoes so we can't break the relationship between echoes. On removing other...

My top priorities are to get realignment parameters into the decision tree (#1021) and get a more stable component estimation (likely #1013). Unless someone else gets to it first, running...