Dan Handwerker

I think this should be more of a supplement rather than a replacement of the adaptive mask. The adaptive mask will first remove echoes that are clearly noise (as is...

May be of interest to @KirstieJane @emdupre @rmarkello @jbteves @tsalo

Like I said, I'm hoping most of this info is already available elsewhere, but probably not in one place. If it's already in one place, we should link to it!...

I can't think if any. I don't think any fully open system is set up to day all outputs & intermediate files from a processing pipeline right now. If this...

If the goal is to get #476 to a place where it can be a use example case, that would probably be late January or early February.

@eurunuela I definitely plan to provide more detail here, but I haven't had a chance to run analyses and make figures that would be useful to others. I wanted to...

Since I'm not an fMRIprep user, I don't completely follow the specific issue at hand here. If I get the part where you're asking me a question, it's whether there...

I agree that (2) is currently what we consider best practice. This is primarily because aggressive non-linear spatial warps, as typical for distortion correction, will almost definitely distort the relationship...

I'll stay out of the prioritization Q so I might be missing something in @tsalo's comment. I do agree with @effigies that the current approach would say do both: EchoN...

For your fork, what if you assume the first echo only is good and you'd remove voxels that drop too much from the first to second echo? Right now, we're...