Jeff Hammerbacher
Jeff Hammerbacher
I noticed that @quasiben has been working on https://github.com/rapidsai/kvikio, which can read Zarr files directly to the GPU. I wonder if we have any workloads that might benefit from this...
I was looking over our [contributing guide](https://pystatgen.github.io/sgkit/latest/contributing.html) while setting up another project and realized we are not yet using [Ruff](https://github.com/charliermarsh/ruff). I think we can replace Black, Flake8, and isort with...
Insitro put out a nice preprint on a method, COAST, for statistically testing for an allelic series https://www.biorxiv.org/lookup/doi/10.1101/2022.12.23.521658. R code at https://github.com/insitro/AllelicSeries. Might be something to put into sgkit someday...
To be assigned to @benjeffery once he's a member of our org!
@aktech has a blog post at https://quansight.com/post/dask-on-coiled that could have some utility here. We need @jeromekelleher to put it in context for biologists though!
https://github.com/pystatgen/sgkit/pull/653
Having a quick example of how to use Oml from utop in the README would be nice. Bonus points for including your MNIST example as well.
I often have a character vector of URLs that represent data files that I'd like to download to a local directory. I can use `purrr:map2` with `curl_download` pretty easily to...