Jeff Hammerbacher issues

Results 100 issues of


                                            Jeff Hammerbacher

Paginate logs retrieved on task detail page

`stdout`/`stderr` can get pretty long for some tasks and scrolling to the bottom is annoying...

enhancement

Ketrew should be able to serialize pipelines as dot files

https://en.wikipedia.org/wiki/DOT_(graph_description_language) Useful for graph visualization.

Ketrew should be able to serialize pipelines as CWL

https://github.com/common-workflow-language/common-workflow-language

Use blosc wheels

https://github.com/zarr-developers/numcodecs/issues/70#issuecomment-750305220

Fix comment typo: "databset" --> "dataset"

Get guacamole and friends building on newest batch of shared libraries

Porting this from @ryan-williams's 12/12 status report so that we can start tracking our work accurately on GitHub!

infrastructure

Make indel realignment splice aware

Potential mapping error filter

From the methods section of ["Recurrent somatic mutations in regulatory regions of human cancer genomes"](http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3332.html): > **Filtering out false positives from mapping errors and SNPs.** > SNPs from dbSNP Build...

variant calling

Ensure test BAM files are valid

validation