Hannes Hauswedell

IDX fields in BCF2.2's VCF header

9

I am currently implementing a stand-alone BCF implementation and am having some trouble with the IDX fields. These are specified quite poorly if I may say so. This is what...

add c++11 parallelization as option to OpenMP

1

e.g. http://ideone.com/Z7zldb

add profiles

1

- [ ] introduce profiles - [ ] auto (auto-detect based on read length) - [ ] illumina (batch-processing, SIMD, small band if possible) - [ ] sanger (xdrop, larger...

species annotation part 4

1

- [ ] directly extract taxID from header if available, user specified regex? - [ ] double-check regex to make sure that single id is not matched twice - [...

- [ ] protein but not alphabet reduction - [ ] seg - [ ] …

No Hardware-Encoding with Nvidia RTX 2060S

3

#### Your system information * Steam client version (build number or date): Apr 04, 2020 * Distribution (e.g. Ubuntu): Devuan Unstable (Debian without SystemD) * Opted into Steam client beta?:...

e.g. the concepts from std:: and std::ranges; all the view adaptors... I could make PRs for this, but I have no clue how. Is there documentation somewhere on how to...

CIGAR does not evaluate to the same length as SEQ

3

This warning is produced by `validate` even if the SEQ is set to `*`. The SAM spec explicitly states that it is ok for the SEQ to be `*` and...

Scalability issues

11

As discussed in the video-call, we have been experimenting with different formats here at deCODE.  Unfortunately, I cannot share the data files, but one very visible observation that we...

user-controlled, abuse-resistent quote-boosting

162

### Pitch This is extracted from #309. I suggest adding the following to mastodon settings and implementing the respective feature: **Users that are in at least one of the following...