Hannes Hauswedell

Unneccessary memory allocation when opening FM index

6

Heap profiling the process of opening an FM index reveals that the size of the LF is allocated twice and then one is freed again. This increases the over-all memory...

- [x] make sure most things builds on OpenBSD (for 2.1.1) - [ ] make openmp work on OpenBSD, currently done here: https://reviews.llvm.org/D34280 - [ ] make sure everything builds...

indexing and find tutorials

2

- [ ] find() interface for online algorithms supports multiple needles but only one haystack, find() interface for indices is the other way around. Either one should add trivial for-loop...

Add "Speeding up Builds"-Tutorial

2

- [ ] opaque pointers, see #924 - [ ] recommend `-flto=n` for GCC - [ ] investigate PCH, see https://lists.fu-berlin.de/pipermail/seqan-dev/2016-February/msg00000.html

Implement support for more BLAST formats in the library, see #990

Support for the Concepts TS

3

Do you plan to support C++20 concepts and possibly also the Concepts TS? I guess redefining `NANO_CONCEPT` as `concept` / `concept bool` is not sufficient as you need to make...

non-member checks only consider related namespaces, not local ones

1

If the load/save functions are provided in the current namespace or the global namespace they are not picked up by the respective checks, i.e. MACROs make the whole thing fail,...

What about cista++ ?

1

Could you include https://github.com/felixguendling/cista ? I would be very interested in how it performs against the others...

Support for Concepts TS (not merely documented concepts)

6

[I didn't want to piggyback on the other issue because this is about actual concepts, not just doc] We are currently writing a library that uses actual concepts (as in...

Still mainained?

4

The last release is more than a year old and I am seeing lots of crashes recently... Dare we hope that it will work again? It's such a good and...