scGSVA issues

numbers of columns of arguments do not match

6

when running ``` res

no slot of name "counts" for this object of class "Assay5"

4

> res pbmc An object of class Seurat 26577 features across 2400 samples within 1 assay Active assay: RNA (26577 features, 2000 variable features) 3 layers present: counts, data, scale.data...

andreyurch

Discrepancy in results from v0.0.16 to 0.0.17

1

First of all, thank you for releasing this package. Results ran on these versions show small changes. Commands used: ``` # gene set hsmg

DCarbonez

About spatial transcriptomes

3

Hi @guokai8 , This is a very good tool for working with single-cell data. Will a tool to process spatial transcriptomes be considered later?

orange-3711

Memory issue

2

Hi! I'm trying to run the function on 100756 cells for the GO genesets and I'm always running into the same memory issue: In asMethod(object) : sparse->dense coercion: allocating vector...

Cristinacondel1

GSVA calculation takes extremely long

7

Dear @guokai8, thanks for your great package. I am currently struggling a little to use it on my dataset, as the GSVA calculation takes extremely long. I am using a...

jonrot1906

Cannot locate raw NES

1

First off, thank you so much for releasing this extremely helpful tool! The majority of the functions have worked well for me, and have been instrumental in my analysis of...

sierranishizaki