MSIGB annotation

[guokai8]

Please use the newest version 0.0.16 with the following command:

hsmg<-buildMSIGDB(species="human",keytype = "SYMBOL",anntype = "HALLMARK")

Btw, I copied the issue into the issues on my github. Best, Kai

On Oct 4, 2023, at 03:16, xavier tekpli [email protected] wrote:

Dear guokai,

Thanks for developing the scGSVA package.

I see that there are functions to build database from the MSIGdb.

With the function: buildMSIGDB(species = "human", keytype = "SYMBOL", anntype = "GO")

I want to specifically use the 50 HALLMARK pathhways from the MSIG. But I am not finding how to do it. Is it possible?

Thanks a lot in advance for your answer. Have a nice day. Xavier