gunjanpandey

@RyloByte and @moshi4 . Agreed. I think it would be very useful have chromosome flip option. @RyloByte - Meanwhile, could you please tell how did you invert a chromosome/contig?

@somnya Glad to know that you were able to make this program work. Could you please share few lines of you input file so people know the format? A lot...

@Dearbhaile You are not doing anything wrong. Example data does not work. Interestingly, the data format of the example files are not matching with the data format suggested.

@scottcain - Have you worked out the format of "xyz.homology"? If so, could you please explain?

This is a major issue as polca refuses to parse variables. Please tell how to parse $R1 and $R1 variables in the -r flag of polca. `polca.sh -a "$input_file" -r...

yes, I was wondering if mate-paired, a special case of paired-end fragments with a (long) insert size, could also be cleaned using trimgalore.

@tanghaibao Thank you very much. It works now. Could you please help me understand how can I draw: > 1. different chromosomes with different colors? > 2. different links/blocks with...

Thanks @etvedte and @wharvey31 We also eagerly wait for organelle genomes to be included in the gxdb as contaminants.

I have the same problem. YAHS is breaking full length chromosomes into smaller pieces and `--no-scaffold-ec` seems to have no effect. Please provide a fix.