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Published 20 hours ago • verified publisher icon ncbi

Screening for mitochondrion

Open wharvey31 opened this issue 5 months ago • 4 comments

Hello,

We are running FCS on a set of genomes before submission to NCBI. We use the following command:

python3 fcs.py --image {fcs_img} screen genome --fasta {input.asm_fasta} --gx-db {params.GXDB_LOC}  --tax-id 9606

and are able to identify the same contamination as NCBI for the most part. What we are apparently missing is mitochondrion. Is there a parameter I am missing to flag this?

Thanks so much for the direction!

wharvey31 avatar Jan 19 '24 18:01 wharvey31