gudeqing

Cannot coerce expression of type 'String' to 'Directory'

4

Hi, can we define Directory in workflow input section? I met error "Cannot coerce expression of type 'String' to 'Directory'". my wdl file, cromwell 59 is used: ``` version development...

what are the reasons for "Could not copy a suitable cache hit"

1

Hi, I am using cromwell-59.jar, and run in local backend mode. Used command: `java -Dconfig.file=cromwell.examples.conf -jar ~/softwares/cromwell-59.jar run example.wdl -i input_detail.json` however, when I try to re-run a successed workflow...

Command example with vep-annotated VCF as input: ```mutscan -1 R1.fq.gz -2 R2.fq.gz -m VEP.vcf -r ref.a``` outputs: ``` No mutation to be scanned Your VCF contains no valid records ```...

control_dp_min is not properly transfered

7


Could boruta_py be adapted to a nested model such as onevsrestclassifier（RandomForestClassifier（））?

Hi， can manta be used to detect splice variant using bam from STAR？

Hi，@sfchen Is it possible to output read cluster information? Following is my intention： * Stat which bases were corrected by genecore. * The sequencing error detected by gencore should be...

the chipseq pipeline runs forever even when errors were reported

1

Hi, I found the chipseq pipeline will run forever even when error [reported!](url) The command used to launch the workflow was as follows: ``` nextflow run nf-core/chipseq --input design.csv --fasta...

### Instructions * Hi, I am using gatk 4.3.0.0 * found a mutant filtered by "strand bias", please see the following record * found two depth table named "AS_SB_TABLE" and...

Unexpected SV with a zero coordinate

1

Hi, I am using the latest SvABA(1.1.3) my pipeline, and the tool AnnotSv reported an invalid record from the result of SvABA in all samples: ``` chrM 0 275359916:1 N...