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the latest mutscan cannot be work with VEP-annoated vcf ?

Open gudeqing opened this issue 2 years ago • 0 comments

Command example with vep-annotated VCF as input: mutscan -1 R1.fq.gz -2 R2.fq.gz -m VEP.vcf -r ref.a outputs:

No mutation to be scanned
Your VCF contains no valid records

So I conclude that there must be something is wrong. However, when raw vcf is used, no such warning but empty results.

gudeqing avatar Nov 02 '21 11:11 gudeqing