civic-client

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Bumps [handlebars](https://github.com/handlebars-lang/handlebars.js) from 4.0.12 to 4.7.8. Release notes Sourced from handlebars's releases. v4.7.8 Make library compatible with workers (#1894) - 3d3796c Don't rely on Node.js global object (#1776) - 2954e7e...

dependabot[bot]

Bumps [browserify-sign](https://github.com/crypto-browserify/browserify-sign) from 4.0.4 to 4.2.2. Changelog Sourced from browserify-sign's changelog. v4.2.2 - 2023-10-25 Fixed [Tests] log when openssl doesn't support cipher [#37](https://github.com/crypto-browserify/browserify-sign/issues/37) Commits Only apps should have lockfiles 09a8995...

dependabot[bot]

Bumps [fsevents](https://github.com/fsevents/fsevents) from 1.2.4 to 1.2.13. Release notes Sourced from fsevents's releases. Release v1.2.13 Only build on Mac-OSX Release v1.2.11 Removing node-pre-gyp so that building fsevents becomes easier and enabled...

dependabot[bot]

Bumps [decode-uri-component](https://github.com/SamVerschueren/decode-uri-component) from 0.2.0 to 0.2.2. Release notes Sourced from decode-uri-component's releases. v0.2.2 Prevent overwriting previously decoded tokens 980e0bf https://github.com/SamVerschueren/decode-uri-component/compare/v0.2.1...v0.2.2 v0.2.1 Switch to GitHub workflows 76abc93 Fix issue where decode...

dependabot[bot]

Register CIViC Entity Prefixes

12

Recently, CIViC registered `civic.aid` and `civic.eid` for assertions and evidence items, respectively. @malachig is considering registering gene -> `civic.gid` and variant -> `civic.vid`. CIViC entities in MetaKB are being revised...

ahwagner

OpenCRAVAT integration

1

OpenCRAVAT has these really beautiful variant reports that among other things provide results from a whole collection of variant effect predictors (FATHMM, MutPred, PROVEAN, etc.). See example here: https://run.opencravat.org/webapps/variantreport/index.html?chrom=chr11&pos=48123823&ref_base=A&alt_base=C This...

malachig

Bumps [shell-quote](https://github.com/substack/node-shell-quote) from 1.6.1 to 1.7.3. Release notes Sourced from shell-quote's releases. v1.7.2 Fix a regression introduced in 1.6.3. This reverts the Windows path quoting fix. (144e1c2) v1.7.1 Fix $...

dependabot[bot]

Bumps [karma](https://github.com/karma-runner/karma) from 0.13.22 to 6.3.16. Release notes Sourced from karma's releases. v6.3.16 6.3.16 (2022-02-10) Bug Fixes security: mitigate the "Open Redirect Vulnerability" (ff7edbb) v6.3.15 6.3.15 (2022-02-05) Bug Fixes helper:...

dependabot[bot]

CIViC bot task to update fusion names to use new delimiter convention

2

To adhere to new guidelines for naming of RNA fusion variants we would like CIViC bot to propose suggested changes for the attached variants. [variants-2022-02-17.xlsx](https://github.com/griffithlab/civic-client/files/8100137/variants-2022-02-17.xlsx) For each variant in this...

malachig

This linkout can be done via the allele registry ID, e.g.: https://erepo.genome.network/evrepo/ui/classifications?caid=CA229624

susannasiebert