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OpenCRAVAT integration

Open malachig opened this issue 3 years ago • 1 comments

OpenCRAVAT has these really beautiful variant reports that among other things provide results from a whole collection of variant effect predictors (FATHMM, MutPred, PROVEAN, etc.).

See example here: https://run.opencravat.org/webapps/variantreport/index.html?chrom=chr11&pos=48123823&ref_base=A&alt_base=C

This works off of build38 coordinates. So maybe we can construct such a URL from information obtained from ClinGen Allele Registry once that link is created.

malachig avatar Jul 08 '21 21:07 malachig